Publications List
Lin, D, Shkedy, Z. Yekutieli, D. Amaratunga, D., and Bijnens, L. (Editors) (2011). Modeling Dose-response Microarray Data in Early Drug Development Experiments Using R, Springer to be published in 2011).
Lin, D., Shkedy, Z., Yekutieli, D., Burzykowski, T., Gohlmann H.W.H., De Bondt, A., Perera, T., Geerts, T. , Bijnens, L. (2007). Testing for trend in dose-response microarray experiments: comparison of several testing procedures, multiplicity and resampling-based inference. Statistical Applications in Genetics and Molecular Biology, 6, 1, Article 26. download
D. Lin , Z. Shkedy , T. Burzykowski , R. Ion , H. W. H. Göhlmann , A. De Bondt , T. Perer , T. Geerts , I. Van den Wyngaert , L. Bijnens (2008) An Investigation on Performance of Significance Analysis of Microarray (SAM) for the Comparisons of Several Treatments with one Control in the Presence of Small-variance Genes. Biometrical Journal, Volume 50 Issue 5, Pages 801 – 823. Download
Lin, Dan., Shkedy, Ziv., Burzykowski, Tomasz., Talloen, W., Bijnens, L. (2009), A Comparison of Procedures for Controlling the False Discovery Rate in the Presence of Small Variance Genes: A Simulation Study . Communications In Statistics-Simulation And Computation, 38(10). p. 2111-2122. Download
Lin D., Shkedy Z.,Yekutieli D., Dilba G., Burzykowski T., Goehlmann H. W.H., De Bondt A., Perera T., Geerts T., and Bijnens L. (2009) Multiple Contrast Test for Detecting Monotonic Dose-response Relationship and FDR-adjusted Confidence Intervals for Selected Parameters in a Microarray Setting. Online Journal of Bioinformatics, 10 (1), 67-73.
Lin D., Shkedy Z., Burzykowski T., Aerts M., Goohlmann H. W.H., De Bondt A., Perera T., Geerts T., and Bijnens L. (2009) Classification of trends in dose-response microarray experiments using information theory selection methods. The Open Applied Informatics Journal 000-000.
Pramana, S., Lin, D., Haldermans, P., Shkedy, Z., Verbeke, T., Gohlmann, H., Bondt, A. D., Talloen, W., and Bijnens., L. (2010). IsoGene: An R Package for Analyzing Dose-response Studies in Microarray Experiments. The R Journal Vol. 2/1. Download
Pramana, S., Lin, D., Haldermans, P., Shkedy, Z., Verbeke, T., Gohlmann, H., Bondt, A. D., Talloen, W., and Bijnens., L. (2010). Analysis Of Dose-Response Studies In Microarray Experiments Using The R Isogene Package. Journal of Statistical Software 000-000.
Kasim A., Shkedy, Z. and Lin. D. (2010), Order Restricted Clustering in Dose-response Microarray Setting, technical report. Download
Kasim A, Shkedy, Z. and Lin. D. (2010) Modeling Dose-response Microarray Data – hierarchical Bayesian approach , technical report. Download
Presentations List
Lin, Dan, 2007, Classification, Dose-response Modelling, and the Evaluation of Biomarker in a Microarray Setting. PhD Presentation. Download
Pramana, S. "Testing for Trend in Dose-Response Microarray Experiments". Presented for BSS Conference, Wepion-Namur, October 17, 2008. Download
Pramana, S. "IsoGeneGUI: a graphical user interface for analyzing dose-response studies in microarray experiments". Presented in CHIPS meeting, Hasselt University, December 15, 2009. Download
Pramana, S., "Dose-Response Modeling of Gene Expression Data in pre-clinical Microarray Experiments". Presented in Workshop on Multiplicity and Microarray Analysis, Hasselt University, Diepenbeek Belgium on February 19, 2010. Download
Pramana, S., Lin, D., Haldermans, P., Shkedy, Z., Verbeke, T., and Talloen, W. "IsoGeneGUI: a graphical user interface for analyzing dose-response studies in microarray experiments". Presented in the R user conference 2010, National Institute of Standards and Technology (NIST), Gaithersburg, Maryland, USA, July 21, 2010. Download
Kasim, Adetayo. Order Restricted Clustering for Dose-Response Microarray Data. Download
